Nature Medicine October 19, 2026

Molecular predictors of minimal residual disease in newly diagnosed multiple myeloma treated with quadruplet therapy

Florence Magrangeas, Mia Cherkaoui, Victor Bessonneau-Gaborit, et al.

Bottom Line

Integrated multiomic profiling of newly diagnosed multiple myeloma patients treated with quadruplet induction revealed distinct genomic, transcriptomic, and epigenomic signatures that predict measurable residual disease status with an AUC of 0.77.

Key Findings

1. Postinduction MRD-negativity rates varied significantly across gene expression subtypes, with HP1/HP3 and MS groups exhibiting superior responses compared to MF and CD2 subtypes.
2. Transcriptomic analysis showed B cell differentiation was associated with MRD positivity, whereas proliferation and MYC programs correlated with MRD negativity, features that were validated in the CASSIOPEIA cohort.
3. Whole-genome sequencing identified established genomic instability phenotypes (APOBEC mutagenesis, chromothripsis) and uncovered new phenotypes that correlated with differential MRD outcomes, validated in the MMRF cohort.
4. New driver alterations were identified and validated across three external cohorts (MMRF, MANHATTAN, and CASSIOPEIA), totaling 1,451 cases, with drivers like CCND1 and MYC correlating with MRD outcomes.
5. DNA methylation profiling delineated nine MRD-linked subgroups characterized by varying extents of hypomethylation in quiescent chromatin and signatures of driver translocations.
6. A multimodal random forest model incorporating genomic, transcriptomic, and epigenomic features effectively predicted post-induction MRD status with an area under the curve (AUC) of 0.77, outperforming clinical and standalone genomic models.

Study Design

Design
Translational Cohort Study
N/A
Sample
423
Patients
Duration
Post-induction
Median
Setting
Multicenter trial cohorts
Population Patients with newly diagnosed multiple myeloma (NDMM) enrolled in the MIDAS cohort
Intervention Integrated multiomic profiling (evaluating response to Isa-KRd quadruplet induction)
Comparator Clinical and singular omic models (baseline references in random forest evaluation)
Outcome Measurable residual disease (MRD) status after induction

Study Limitations

• An AUC of 0.77, while demonstrating strong predictive capability, indicates that predicting biological response remains imperfect and requires further refinement.
• The clinical implementation of comprehensive multimodal profiling (whole-genome, transcriptomic, and epigenomic sequencing) is resource-intensive and may not be immediately feasible in routine practice.
• While the model identifies patients unlikely to achieve MRD negativity, prospective randomized trials are needed to determine if altering standard therapeutic strategies based on these multiomic predictions will ultimately improve survival outcomes.

Clinical Significance

This study establishes a comprehensive multiomic classification for newly diagnosed multiple myeloma that deeply correlates underlying tumor biology with early treatment response. By integrating genomic, transcriptomic, and epigenomic data into a predictive model with an AUC of 0.77, the research provides a critical framework to identify patients who are unlikely to achieve MRD negativity with standard Isa-KRd quadruplet induction. This facilitates the future design of risk-adapted trials tailored for high-risk molecular subgroups who might benefit from alternative or preemptively escalated therapies.

Historical Context

The integration of anti-CD38 monoclonal antibodies with proteasome inhibitors, immunomodulatory drugs, and dexamethasone (quadruplet therapy) has redefined the induction standard of care for newly diagnosed multiple myeloma (NDMM), leading to unprecedented rates of deep response and minimal residual disease (MRD) negativity. Despite this, clinical outcomes remain heterogeneous, and patients who remain MRD-positive continue to face elevated risks of early relapse. Historically, risk stratification relied primarily on conventional cytogenetic abnormalities (e.g., via FISH) and standard clinical markers, which inadequately capture the vast biological complexity of the disease. This study represents a major leap toward precision hematology by executing an integrated multiomic characterization to unearth the complex molecular determinants dictating the depth of response to modern quadruplet therapies.

Guided Discussion

High-yield insights from every perspective

Med Student
Medical Student

What are the mechanisms of action of the four distinct classes of drugs typically used in standard quadruplet induction therapy for newly diagnosed multiple myeloma, and why is achieving minimal residual disease (MRD) negativity considered a crucial clinical endpoint?

Key Response

This assesses foundational pharmacological knowledge of the four core drug classes (anti-CD38 monoclonal antibody, proteasome inhibitor, immunomodulatory drug, and corticosteroid) and tests the student's understanding of the conceptual shift in myeloma management from measuring basic clinical response to targeting deep molecular remission (MRD) for prolonged survival.

Resident
Resident

If a newly diagnosed multiple myeloma patient achieves MRD negativity following quadruplet induction therapy, how does this currently impact the decision to proceed with autologous stem cell transplantation (ASCT) versus transitioning directly to maintenance therapy?

Key Response

Residents must understand that while MRD negativity is a powerful prognostic marker, its role in definitively guiding treatment de-escalation (such as omitting upfront ASCT) is still under active investigation in clinical trials (e.g., the MASTER or ADVANCE trials) and has not yet broadly replaced standard-of-care ASCT in transplant-eligible patients outside of a trial setting.

Fellow
Fellow

An AUC of 0.77 for a multiomic predictive model suggests moderate-to-good discrimination. How might high-risk cytogenetic abnormalities (such as del(17p) or t(4;14)) independently interact with multiomic signatures and MRD kinetics in quadruplet-treated patients, particularly regarding the phenomenon of early MRD loss?

Key Response

Fellows should recognize that while quadruplet therapy can drive high-risk patients to early MRD negativity, these patients frequently experience a faster loss of MRD negativity compared to standard-risk patients. Understanding whether the multiomic signature predicts sustained MRD negativity versus simply single-timepoint MRD negativity is critical for nuanced subspecialty management.

Attending
Attending

How should we integrate a multiomic predictive model for MRD into our shared decision-making process for frail or elderly patients who might not tolerate standard quadruplet induction, balancing the prognostic value of the signature against the toxicity of the regimen?

Key Response

Attendings must balance the drive for deep remissions with patient fitness. If a multiomic tool predicts a very low likelihood of MRD negativity despite intensive quadruplet therapy, this could justify a less toxic triplet approach, personalizing treatment intensity based on the molecular probability of benefit and mitigating unnecessary toxicity.

Scholarly Review

Critical appraisal through the lens of expert reviewers and guideline development

PhD
PhD

In developing a multiomic prediction model incorporating genomic, transcriptomic, and epigenomic data to achieve an AUC of 0.77, what specific dimensionality reduction and cross-validation techniques are necessary to prevent severe overfitting, given the high-dimensional nature of the input features relative to typical myeloma cohort sizes?

Key Response

High-dimensional multiomic data presents a significant risk of overfitting due to the high number of features relative to the number of patients. A PhD-level researcher would critically evaluate the use of regularization techniques (e.g., elastic net, sparse deep learning), batch effect correction, and the necessity of fully independent external validation cohorts to ensure the AUC of 0.77 is robust.

Journal Editor
Journal Editor

Does the manuscript provide a head-to-head comparison of this novel multiomic signature's predictive value against standard, readily available baseline clinical and cytogenetic risk tools (such as the R2-ISS), and does it demonstrate statistically significant net reclassification improvement (NRI)?

Key Response

A critical peer reviewer would flag that a complex, expensive multiomic assay is only clinically and editorially valuable if it substantially outperforms or adds significant incremental predictive value to existing, cheaper, and universally available prognostic tools like FISH and LDH.

Guideline Committee
Guideline Committee

Before incorporating this multiomic MRD-prediction signature into NCCN or ESMO guidelines for the risk-stratification of newly diagnosed multiple myeloma, what level of evidence is required to demonstrate that signature-guided therapy modification improves overall survival compared to current R-ISS based standard-of-care?

Key Response

Current guidelines recommend risk stratification based on FISH and clinical markers. For a novel multiomic tool to receive a strong recommendation, randomized controlled trials must demonstrate clinical utility-specifically, that escalating or de-escalating treatment based on the multiomic score improves hard clinical endpoints like progression-free or overall survival, rather than just predicting an intermediate endpoint like MRD.

Clinical Landscape

Noteworthy Related Trials

2019

CASSIOPEIA Trial

n = 1,085 · Lancet

Tested

Daratumumab plus bortezomib, thalidomide, and dexamethasone (D-VTd)

Population

Transplant-eligible newly diagnosed multiple myeloma

Comparator

Bortezomib, thalidomide, and dexamethasone (VTd)

Endpoint

Stringent complete response (sCR) rate at 100 days post-transplant

Key result: D-VTd significantly improved the sCR rate (29% vs 20%) and progression-free survival compared to VTd alone, while also increasing MRD negativity rates.
2020

GRIFFIN Trial

n = 207 · Blood

Tested

Daratumumab plus lenalidomide, bortezomib, and dexamethasone (D-RVd)

Population

Transplant-eligible newly diagnosed multiple myeloma

Comparator

Lenalidomide, bortezomib, and dexamethasone (RVd)

Endpoint

Stringent complete response (sCR) rate by the end of post-transplant consolidation

Key result: D-RVd deepened responses with a significantly higher sCR rate and greater MRD negativity compared to RVd.
2023

PERSEUS Trial

n = 709 · NEJM

Tested

Subcutaneous daratumumab plus bortezomib, lenalidomide, and dexamethasone (D-VRd)

Population

Transplant-eligible newly diagnosed multiple myeloma

Comparator

Bortezomib, lenalidomide, and dexamethasone (VRd)

Endpoint

Progression-free survival (PFS)

Key result: D-VRd significantly reduced the risk of disease progression or death and led to substantially higher and more sustained rates of MRD negativity compared to VRd.

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